PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG010611.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family NAC
Protein Properties Length: 628aa    MW: 70357.6 Da    PI: 4.4193
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG010611.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM91.51.4e-28171392128
          NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk. 95 
                   +Gf+F+P+deel+ +yL +k++g+ ++    ++ v+++++ePwdLp k  +k  ++  wyf ++rd +   gk ++r+tk+gyWk t ++k+++++ 
  CCG010611.1  17 EQGFKFDPSDEELIRKYLVPKTRGDIMRG-LPMAVVNLCEHEPWDLPgKsIIKLaGQVTWYFICPRDLR---GKVHRRKTKAGYWKPTSQQKSITAEg 110
                  68***********************9988.569**************644333325559******9985...7789999*****************97 PP

          NAM  96 kgelvglkktLvfykgrapkgektdWvmheyrl 128
                  +++++g+ +tL fy    +k ++t W++ e+ l
  CCG010611.1 111 TKKEIGVVRTLRFY----EKQVRTGWMIYEFDL 139
                  7778**********....45679*******986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.01E-3111158IPR003441NAC domain
PROSITE profilePS5100535.18816159IPR003441NAC domain
PfamPF023651.2E-1918139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 628 aa     Download sequence    Send to blast
MDDYFSSALP LLLLLMEQGF KFDPSDEELI RKYLVPKTRG DIMRGLPMAV VNLCEHEPWD  60
LPGKSIIKLA GQVTWYFICP RDLRGKVHRR KTKAGYWKPT SQQKSITAEG TKKEIGVVRT  120
LRFYEKQVRT GWMIYEFDLI AKSSQFKKGQ FVLCKLEFDS KGEKSKKGEQ SHHIAPVFHS  180
EVEPSQSMDS DSENINPSEM AMRYSPCDES ELSHHAGSHF GNQNPSELMN KSARQLSELS  240
HHMAPEFRNH NSNNLMPNLV YDGSGSSHST VFNCEDQYWN QPTVDSAYNG SESPYMAFDS  300
ENQNPNELPT VDNPTSNVNK NHGMAFEGCF EQENSPNPAL VQLPACMEES HFFRGFGTLE  360
NQEPFFPPCS FINQSTYDKS ESSSLMDFDF ENQNLVKEFD ISAFGEGVWS NTTATPPDFG  420
NQNPCKKTDT STFEEGYSSY FNSSSDNNLA DVALPEVRSG IQAGIEGCFE QENSPNPALV  480
QLPACMEESH FFRGFGTLEN QEPFFPPRSF INQSTYDKSE SSSLMNFGFG NQNPVKEFEI  540
SAFGEGVWSN TTATPPDFGN QNPCKKTDTS TIEEGYSSYF NSSSSDNDLA DVALPEVSPG  600
LQAEIEGCFE QENSPNPALV QLPSVGFE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swp_D2e-191015614165NAC domain-containing protein 19
3swp_C2e-191015614165NAC domain-containing protein 19
3swp_B2e-191015614165NAC domain-containing protein 19
3swp_A2e-191015614165NAC domain-containing protein 19
3swm_D2e-191015614165NAC domain-containing protein 19
3swm_C2e-191015614165NAC domain-containing protein 19
3swm_B2e-191015614165NAC domain-containing protein 19
3swm_A2e-191015614165NAC domain-containing protein 19
4dul_B2e-191015611162NAC domain-containing protein 19
4dul_A2e-191015611162NAC domain-containing protein 19
1ut7_B2e-191015611162NO APICAL MERISTEM PROTEIN
1ut7_A2e-191015611162NO APICAL MERISTEM PROTEIN
1ut4_B2e-191015611162NO APICAL MERISTEM PROTEIN
1ut4_A2e-191015611162NO APICAL MERISTEM PROTEIN
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826738e-33AC182673.2 Populus trichocarpa clone Pop1-26A1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320761.20.0hypothetical protein POPTR_0014s07220g
TrEMBLB9IC660.0B9IC66_POPTR; Uncharacterized protein
STRINGPOPTR_0014s07220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1900836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17980.14e-25NAC domain containing protein 71